PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07830.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 243aa    MW: 26533.5 Da    PI: 7.4683
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07830.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18168202135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Rsa1.0_07830.1_g00003.1 168 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 202
                              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.6E-812243IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.952162198IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-16162212IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15164226No hitNo description
Gene3DG3DSA:3.30.50.101.0E-13165200IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.64E-14167214No hitNo description
PROSITE patternPS003440168193IPR000679Zinc finger, GATA-type
PfamPF003206.5E-16168202IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDVYGLSSPD LLRSIDDLLD FSNDEIFSPS STVASSAASS SENPFNFHAS PPPPPPPPSS  60
LLTDFTHDLC VPSDDAAHLE WLSRFVDDSF SSDYPANPLT MTVRPDVSFA GKPRNRRSRA  120
QASPVAAGTW APTPESELCY SVAKRNPSRR LETESTAADG GGGGGRRCTH CASEKTPQWR  180
TGPLGPKTLC NACGVRFKSG RLVPEYRPAS SPTFVLTQHS NSHRKVMELR RQKEQLDSRF  240
QPQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07830.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487237.11e-178PREDICTED: GATA transcription factor 4-like
SwissprotO497431e-109GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A397YAA71e-117A0A397YAA7_BRACM; GATA transcription factor
TrEMBLM4CTJ81e-117M4CTJ8_BRARP; GATA transcription factor
STRINGBra007542.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-109GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]