PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08008.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 260aa    MW: 29126.5 Da    PI: 7.7806
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08008.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.66e-333588255
                  G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             prlrWtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR 
  Rsa1.0_08008.1_g00001.1 35 PRLRWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 88
                             8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3353191IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-303188IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-233588IPR006447Myb domain, plants
SuperFamilySSF466891.08E-143587IPR009057Homeodomain-like
PfamPF002491.3E-83687IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGKAAGRNGD GNYNGVGFNG HRGGGVRPYV RSPVPRLRWT PDLHRCFVNA VDMLGGQHRA  60
TPKLVLKMMD VKGLTISHVK SHLQMYRGSK LTLGKPEESS SSSIRRRQET EEDHLHDNLS  120
LHTRNDCLLG FHSFPLSSHS FLRGGRGKEQ TSESSGDDDA DFLQIMNMKK TKETTTFRSN  180
HFHKETEKEK NTWQEHEQEE EELSLSLSLN HHHWRSNGSS VSETSEAVST CSAPFIFKDC  240
LGSSPKIDLN LELSISLLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-183690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-183690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-183690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-183690357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08008.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436922.10.0PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
SwissprotQ700D96e-78MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078JZ201e-164A0A078JZ20_BRANA; BnaCnng70380D protein
TrEMBLA0A3P6D3Z21e-164A0A3P6D3Z2_BRAOL; Uncharacterized protein
STRINGBo2g134900.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.12e-69G2-like family protein