PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08124.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 218aa    MW: 24092.8 Da    PI: 10.3032
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08124.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind2432.1e-7441218117301
                GAGA_bind 117 pqledsavelreeeklealpieeaaeeakekkkkkkrqrak..kpkekkakkkkkksekskkkvkkesaderskaekksidl.vln 199
                              pq e+  + +  + +l  +p       + ++++  +++++k    +++k ++kk+  +++k  +k+ s+ ++ k+ekk+ d+ v++
  Rsa1.0_08124.1_g00001.1  41 PQAEPAEATMVPQVHLFPPP-------TLDSRHDMEQKSTKlsPSLKPKPQSKKR--SAPKTLKKTLSV-PEIKREKKNPDInVVD 116
                              34444333333333333333.......3333333322222200333344444444..444334444443.789*********8899 PP

                GAGA_bind 200 gvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDL 285
                                s+D s++P+PvCsCtG++++CYkWG+GGWqS+CCt++iS++PLP+st+r+g+R+agrKmS+ga+ klL +La+eGydl +pvDL
  Rsa1.0_08124.1_g00001.1 117 ISSFDVSGVPPPVCSCTGVPKVCYKWGMGGWQSSCCTISISTFPLPMSTTRPGTRLAGRKMSNGAYVKLLMRLAGEGYDLTCPVDL 202
                              99************************************************************************************ PP

                GAGA_bind 286 kdhWAkHGtnkfvtir 301
                              ++hWA+HGtnkfvti+
  Rsa1.0_08124.1_g00001.1 203 RNHWARHGTNKFVTIK 218
                              ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.4E-771218IPR010409GAGA-binding transcriptional activator
PfamPF062176.6E-6644218IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MQQPATTSTT KETSLPTSNP HWFHSYFPVP RTTGFDLSQV PQAEPAEATM VPQVHLFPPP  60
TLDSRHDMEQ KSTKLSPSLK PKPQSKKRSA PKTLKKTLSV PEIKREKKNP DINVVDISSF  120
DVSGVPPPVC SCTGVPKVCY KWGMGGWQSS CCTISISTFP LPMSTTRPGT RLAGRKMSNG  180
AYVKLLMRLA GEGYDLTCPV DLRNHWARHG TNKFVTIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08124.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629841.11e-136PREDICTED: protein BASIC PENTACYSTEINE7
SwissprotO822861e-110BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A3P6A6321e-135A0A3P6A632_BRACM; Uncharacterized protein
STRINGBra023013.1-P1e-135(Brassica rapa)
STRINGBo3g028310.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.47e-99basic pentacysteine 7