PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08178.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 355aa    MW: 37908.6 Da    PI: 9.4001
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08178.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.74.6e-22207269163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              ++e+kr++rkq+NRe+ArrsR+RK+ae++eL+++++ L  eN +L+ e+++lk ++++l se+
  Rsa1.0_08178.1_g00001.1 207 DREVKRQKRKQSNRESARRSRLRKQAECDELAQRAELLNDENASLRAEINRLKSQCEELASEN 269
                              5899********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165964.0E-1668167No hitNo description
Gene3DG3DSA:1.20.5.1708.1E-18200266No hitNo description
SMARTSM003381.8E-20207271IPR004827Basic-leucine zipper domain
PfamPF001705.7E-20208269IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.967209272IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-11210266No hitNo description
CDDcd147025.50E-23212262No hitNo description
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMPPYGTPPP HPYVTMYPPG GMYGHPSMPP GSYPYSAYAM PSPNGMTEAS GNTTGGTEGD  60
AKQPEVKEKL PIKRSRGSLG SLNMITGKNN EPGKNSANGA YSKRHGSGSG QDGKDASENG  120
GSSANAPRNG TPVSQTVPIM PMPAAGPPTN LNIGMEYWGA PPTSAAIPGM HAKATTSGMH  180
AKATSVPGVV PPVSRDGGHS QPWLQDDREV KRQKRKQSNR ESARRSRLRK QAECDELAQR  240
AELLNDENAS LRAEINRLKS QCEELASENT SLKDQLLSFP SLEGINMDKG DQEPETSQTV  300
VAETKALALV AMAQSEVLRC PHRLDTSKQG NIHKALALSA FLVNSMATKA LHYRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223229RRSRLRK
2223230RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08178.1_g00001.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531641e-110AK353164.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439772.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_018439773.10.0PREDICTED: bZIP transcription factor 16
SwissprotQ501B21e-163BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A397Z8E91e-174A0A397Z8E9_BRACM; Uncharacterized protein
STRINGBra005335.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-152basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]