PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_08213.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 419aa MW: 46284.7 Da PI: 6.8914

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_08213.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.6e-11	167	195	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le Rsa1.0_08213.1_g00001.1 167 KTLRRLAQNREAARKSRLRKKAYVQQLES 195 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-9	158	211	No hit	No description
SMART	SM00338	5.5E-6	163	263	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	165	209	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.77E-7	167	208	No hit	No description
CDD	cd14708	1.27E-23	167	219	No hit	No description
Pfam	PF00170	8.5E-8	167	197	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	170	185	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-27	258	334	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
SSKDFNHHHH QMQGHHQNHH QQLSSASTTS SNGNFMNKDG YDLGEIDPSL FLYLDGQGHH 60 DPPSTAPLSH HHTTQNLAMR PPTSTLNIFP SQPMHIEPPP SSSTPNSDNT RLVAPSSSTR 120 PSSEPSMDLT NHSQFQLPQP SKSIKKEGNR KGPASSDHDI PKSSDPKTLR RLAQNREAAR 180 KSRLRKKAYV QQLESCRIKL TQLEQEIQRA RSQGVFFGGS LIGGDQQQGG LSIGPGNTSS 240 AVFDMEYTRW LEEQQRLLAE LRVATQENLT ENELRMFVDT CLAHYDHLIN LKAMVAKTDV 300 FHLISGAWKT PAERCFLWLG GGGFRPSEII KVIVNQIEQL TEQQIVGICG LQQSTQEAEE 360 ALSQGLDALN QSLSDSIVSD SLSPASAQFP PHLSNFMSHM SLALNKLSAL EGFVLQVGV

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

SSKDFNHHHH QMQGHHQNHH QQLSSASTTS SNGNFMNKDG YDLGEIDPSL FLYLDGQGHH  60
DPPSTAPLSH HHTTQNLAMR PPTSTLNIFP SQPMHIEPPP SSSTPNSDNT RLVAPSSSTR  120
PSSEPSMDLT NHSQFQLPQP SKSIKKEGNR KGPASSDHDI PKSSDPKTLR RLAQNREAAR  180
KSRLRKKAYV QQLESCRIKL TQLEQEIQRA RSQGVFFGGS LIGGDQQQGG LSIGPGNTSS  240
AVFDMEYTRW LEEQQRLLAE LRVATQENLT ENELRMFVDT CLAHYDHLIN LKAMVAKTDV  300
FHLISGAWKT PAERCFLWLG GGGFRPSEII KVIVNQIEQL TEQQIVGICG LQQSTQEAEE  360
ALSQGLDALN QSLSDSIVSD SLSPASAQFP PHLSNFMSHM SLALNKLSAL EGFVLQVGV

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_08213.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ132742	0.0	HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472626.1	0.0	PREDICTED: transcription factor TGA2-like isoform X2
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A3P5ZE78	0.0	A0A3P5ZE78_BRACM; Uncharacterized protein
STRING	Bo3g004060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	0.0	bZIP family protein

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]