PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08236.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 192aa    MW: 22460.4 Da    PI: 7.4941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08236.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.83.7e-18161644128
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk... 79 
                              G++F+P ++el++eyL +k++g++ e+   i++ d+y+ ePw L++ + +  +++ewy+ ++r + ++     gk+++r +t+   
  Rsa1.0_08236.1_g00001.1  16 GIQFQPYEDELINEYLIPKLKGQPREE---ITTKDVYSKEPWLLDHPMGSffKKNEWYYIVTRTQLSKkkigCGKKAKRkITRddd 98 
                              99**********************666...9*************86444444889****999876555333456777774555677 PP

                      NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfy......kgrapkge...........ktdWvmheyrl 128
                              sg Wka  k   + ++ ++ ++g  +tL+f       ++++++g            +++W+m ey l
  Rsa1.0_08236.1_g00001.1  99 SGSWKANAK-GYIRDEeTKMVIGQHQTLAFVkskvnnEKKQKRGDstscdvvvpgsESSWIMTEYML 164
                              9****9988.55555437788**********666655223333223344445555589999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-217181IPR003441NAC domain
PROSITE profilePS5100523.08913182IPR003441NAC domain
PfamPF023653.8E-1316163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MHEYNDMYEY NEEDGGIQFQ PYEDELINEY LIPKLKGQPR EEITTKDVYS KEPWLLDHPM  60
GSFFKKNEWY YIVTRTQLSK KKIGCGKKAK RKITRDDDSG SWKANAKGYI RDEETKMVIG  120
QHQTLAFVKS KVNNEKKQKR GDSTSCDVVV PGSESSWIMT EYMLPEIEGK FRELVICKIH  180
VTENSNEKKK DG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08236.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464497.11e-142PREDICTED: NAC domain-containing protein 35-like
TrEMBLA0A397XK521e-100A0A397XK52_BRACM; Uncharacterized protein
STRINGBo9g135820.18e-99(Brassica oleracea)
STRINGBo9g135840.11e-100(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.14e-13NAC domain containing protein 35