PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08346.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 171aa    MW: 19891.9 Da    PI: 10.308
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08346.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.3e-31959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva++ifss+gkl+eys+
  Rsa1.0_08346.1_g00001.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYST 59
                             79***********************************************96 PP
2K-box99.16.5e-3378171497
                    K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                              ++ +  + +++e++  e+akLk+++e L++++R+++GedLesLslk+Lq+Le+qL+ ++k+iRs+Kn+ ++e+i+ lqkk k+lq+
  Rsa1.0_08346.1_g00001.1  78 KQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLESLSLKDLQSLEHQLHAAIKSIRSRKNQAMYESISALQKKDKALQD 163
                              56666778899*************************************************************************** PP

                    K-box  90 enkaLrkk 97 
                              +n+aL kk
  Rsa1.0_08346.1_g00001.1 164 HNNALLKK 171
                              *****886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.562161IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.72E-39279No hitNo description
SuperFamilySSF554551.44E-33291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-323859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-2786171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.19488171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALVIFSS KGKLFEYSTD  60
SCMERILERY DRYLYSDKQL VGRDISQSEN WVLEHAKLKA RVEVLEKNKR NFMGEDLESL  120
SLKDLQSLEH QLHAAIKSIR SRKNQAMYES ISALQKKDKA LQDHNNALLK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-23190189MEF2C
5f28_B4e-23190189MEF2C
5f28_C4e-23190189MEF2C
5f28_D4e-23190189MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08346.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSAU256950.0U25695.1 Sinapis alba transcription factor SaMADS B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490011.11e-120PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ412741e-118AGL8_SINAL; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A0D3DDG81e-117A0A0D3DDG8_BRAOL; Uncharacterized protein
TrEMBLA0A3N6Q1X61e-117A0A3N6Q1X6_BRACR; Uncharacterized protein
STRINGBo7g098190.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-120AGAMOUS-like 8
Publications ? help Back to Top
  1. Menzel G,Apel K,Melzer S
    Identification of two MADS box genes that are expressed in the apical meristem of the long-day plant Sinapis alba in transition to flowering.
    Plant J., 1996. 9(3): p. 399-408
    [PMID:8919916]