PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08409.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 159aa    MW: 17792.9 Da    PI: 9.9025
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08409.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_157.82.4e-1856118163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+e+kr+rrkq NReAA rsR+RK+ae +eL++  ++L aeN +L+ e+++lk + ++l+se+
  Rsa1.0_08409.1_g00001.1  56 EREVKRQRRKQTNREAAERSRLRKQAEFDELAKHTEVLNAENASLRAEMNRLKRQREELTSEN 118
                              799**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.8E-1352115No hitNo description
PfamPF001704.8E-1656118IPR004827Basic-leucine zipper domain
SMARTSM003382.0E-1456120IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.86358121IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.33E-1059115No hitNo description
CDDcd147027.64E-1461110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
SESGGSANGP RNGSAGSSTP LPPVSQNMPV MPKTAAGAPT SAAPIPGMHR KVYQDEREVK  60
RQRRKQTNRE AAERSRLRKQ AEFDELAKHT EVLNAENASL RAEMNRLKRQ REELTSENNS  120
LKVQLLSFPP LEGINIKMEK DDQEPDTYQT VFTETKFVM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08409.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474085.11e-111PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B27e-56BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A3N6RZN37e-68A0A3N6RZN3_BRACR; Uncharacterized protein (Fragment)
TrEMBLA0A3P6A4S95e-68A0A3P6A4S9_BRACM; Uncharacterized protein
TrEMBLM4E2L15e-68M4E2L1_BRARP; Uncharacterized protein
STRINGBra023012.1-P8e-69(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-58basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]