PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08643.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 236aa    MW: 26610.8 Da    PI: 6.8281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08643.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-124065126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             ++++ C+ff+rtG+C yG++C+F+H+
  Rsa1.0_08643.1_g00001.1 40 PGERDCQFFLRTGQCGYGNSCRFNHP 65
                             5789*********************9 PP
2zf-CCCH406.6e-1386110327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C +f++tG CkyG++CkF+H++
  Rsa1.0_08643.1_g00001.1  86 EPDCEYFLKTGACKYGSTCKFHHPK 110
                              789********************96 PP
3zf-CCCH29.51.2e-09131154326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              ++ C+++ +tG C++G  CkF+H+
  Rsa1.0_08643.1_g00001.1 131 EKSCPYYVQTGMCRFGVACKFHHP 154
                              667********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8683967IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-63966IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-104165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-64368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-54564IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-683110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.62483111IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-1086110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-688111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-589109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6127156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479128156IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4128155IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6130154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4133153IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSSETQNSTG SVRSSDKIEE DTLKVNEENM EQTSPYPDRP GERDCQFFLR TGQCGYGNSC  60
RFNHPLTHLP QAVLYHRDEL PERIGEPDCE YFLKTGACKY GSTCKFHHPK DRNGAEPVLF  120
NVLGYPMRQG EKSCPYYVQT GMCRFGVACK FHHPHPQPHN NNGHSTTYGM PTFPYGMMSL  180
PPATYGVMPP PQVPYPQTYM PFIFAPPQGW SPYMAGSNSI YNGKTQPDSS SERAEC
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08643.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472932.11e-174PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487721e-115C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A3P6AMJ91e-148A0A3P6AMJ9_BRAOL; Uncharacterized protein
STRINGBra022919.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-109zinc finger nuclease 2