PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08659.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 207aa    MW: 22891.8 Da    PI: 7.6112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08659.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12114159555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  Rsa1.0_08659.1_g00001.1 114 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 159
                              99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-17107167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-11107163No hitNo description
PROSITE profilePS5088817.028109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16111166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9114159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MREREAKERR QEEEMENGNG EGKGEFINQN NNNDYFLDSM SMLSSLPPCW DSSLPPPHPP  60
PPPPPQSLLH ALTESGGPSQ DGLQVQGTVS TTSAPVARQK PRVRARRGQA TDPHSIAERL  120
RRERIAERMK SLQELVPNTN KTDKASMLDE IIEYVRFLQL QVKVLSVSRL GGARAAGGPG  180
FNGLTSEENG FLYGPFAKNL GFLLPFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08659.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610489.19e-96PREDICTED: transcription factor bHLH82-like
SwissprotQ9LSQ32e-88BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A078J6U66e-98A0A078J6U6_BRANA; BnaCnng39760D protein
STRINGBo9g133640.16e-95(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-47LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]