PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08685.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 275aa    MW: 31014 Da    PI: 5.4308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08685.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.75.3e-2294144256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAaka+++a+ kl+ge
  Rsa1.0_08685.1_g00001.1  94 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAKAYDQAAYKLRGE 144
                              59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.50E-3593152No hitNo description
SuperFamilySSF541713.53E-2394152IPR016177DNA-binding domain
SMARTSM003801.1E-3694157IPR001471AP2/ERF domain
PROSITE profilePS5103223.57894151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3294152IPR001471AP2/ERF domain
PRINTSPR003671.6E-1195106IPR001471AP2/ERF domain
PfamPF008472.4E-1595144IPR001471AP2/ERF domain
PRINTSPR003671.6E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAAIDMFNSS TDLSDPFKEE LMKVLKPFTN SLPCLPPVPN TIFGFNQTTP LGLNHLTPYQ  60
IIQIQNQLNQ RRSTTISNLS PKPVPMKNMT AQKLYRGVRQ RHWGKWVAEI RLPKNRTRLW  120
LGTFDTAEEA AKAYDQAAYK LRGEVARLNF PHMRREYGHG GGDSSFKPLH PSVEAKIEAI  180
CQSLVKTEDV DLPCSETELF PPKTEYQEIE FGSLRADENS FSDESQVASS SPESGITTTF  240
LGFSDSRFDE IGSFVLEKFP SVEIDWDAIS KLSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21951621580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08685.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892600.0AC189260.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482686.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
RefseqXP_018482701.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-156ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A398ANB71e-180A0A398ANB7_BRACM; Uncharacterized protein
STRINGBra011833.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-139ERF family protein