PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08704.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 321aa    MW: 35642.3 Da    PI: 7.5028
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08704.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.21.3e-33601782104
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 
                               g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl++ak++i+el+ ++ s+++++  ++++s  + +++
  Rsa1.0_08704.1_g00002.1  60 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGLDQPSKAVDWLLNAAKEEIDELPPLPVSPETFSlfNHHQSFLNLGQQ 145
                              689*************************************************************9999988877666666666654 PP

                      TCP  86 ssg...............kaaksaakskksqksa 104
                                +               + ++ +++++++ +++
  Rsa1.0_08704.1_g00002.1 146 PGQdptqlgfkvngcaeeS-SSREENNNERGEKD 178
                              4445677777777666422.22222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-2962178IPR005333Transcription factor, TCP
PROSITE profilePS5136931.74862120IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNTGPWKDTN DDVSGQTRTR HEEAVVAVAT TKRPASISSS SSSSWMKSKD PRIVRVSRAF  60
GGKDRHSKVC TLRGLRDRRV RLSVPTAIQL YDLQERLGLD QPSKAVDWLL NAAKEEIDEL  120
PPLPVSPETF SLFNHHQSFL NLGQQPGQDP TQLGFKVNGC AEESSSREEN NNERGEKDVT  180
FRNNHHIGSY GVYDNMEHHH EQHSSFQADY HHQLHSLVPF PSQILVCPMT TLSNTTTTTA  240
TQSLFPSSSS AGSWTMETTE PRRMVSHFQM PLMGSSSSSA SQNISTLYSL LHGSSSRNNG  300
SSNRMSSVQL NQTSRGSDNP M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1967121155Putative transcription factor PCF6
5zkt_B2e-1967121155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08704.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491351.10.0PREDICTED: transcription factor TCP13-like
SwissprotQ9S7W51e-156TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A0D3B9D00.0A0A0D3B9D0_BRAOL; Uncharacterized protein
TrEMBLA0A398A2Q50.0A0A398A2Q5_BRACM; Uncharacterized protein
TrEMBLA0A3N6RJD90.0A0A3N6RJD9_BRACR; Uncharacterized protein
STRINGBo3g055460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-138plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]