PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08862.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 327aa    MW: 34646.7 Da    PI: 7.3691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08862.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11132177555
                              HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Rsa1.0_08862.1_g00001.1 132 HSIAERLRRERIAERMKGLQELVPNgN------KTDKASMLDEIIDYVKFLQ 177
                              99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.64E-13125181No hitNo description
SuperFamilySSF474591.31E-16125186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.984127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15129186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8132177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMNSSLLTPS SSSHVQTPAT TFDHEDFLDQ IFASSPWPSD EAHPPPPPSS DGFVDSRHQQ  60
ITMMPLSSHH QNEFYDQRQG SAGGLMNQQG QALTQTQQPQ VSASVATGRT AAAPPQSRTK  120
VRARRGQATD PHSIAERLRR ERIAERMKGL QELVPNGNKT DKASMLDEII DYVKFLQLQV  180
KVLSMSRLGG GASVPSQISE EGGSHLNASS AVAGGNQTTG NSNDTLTMTE HQVAKLMEED  240
MGSAMQYLQG KGLCLMPISL ATAISTATCH SRNPLIPGAA GVGGRPSSPS LSGMTVQSTT  300
KVKLNGNGVP EGSSSSAVKE AVFVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08862.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438414.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG91e-161BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A397Y2S90.0A0A397Y2S9_BRACM; Uncharacterized protein
STRINGBo8g099910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-140LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]