PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_08919.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 199aa MW: 21599.1 Da PI: 9.1766

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_08919.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.7	1.8e-07	166	192	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + Rsa1.0_08919.1_g00002.1 166 SHSLAERARREKINARMKLLQELVPGC 192 8************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-8	160	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.67E-5	160	194	No hit	No description
PROSITE profile	PS50888	11.23	162	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-8	165	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-5	166	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDLTGGFGAR YDGGQEATGL ESLHLGDELR QLPPDGFTAL LELPPTQALK LLHFTDSPSS 60 SPQAAPIAPP SFASNLALME RPARFSTEHQ QNGTNLSGET TTSSSVKTEP AETNSSSQAV 120 NNRSGKRKDS DNKPKSSTKK KNKSSEEKEK LPYVHVRARR GQATDSHSLA ERARREKINA 180 RMKLLQELVP GCDKVCLSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_08919.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488593	2e-67	AF488593.1 Arabidopsis thaliana clone bHLH060 putative bHLH transcription factor mRNA, complete cds.
GenBank	AK352728	2e-67	AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
GenBank	AY139773	2e-67	AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds.
GenBank	BT003037	2e-67	BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018461652.1	1e-143	PREDICTED: transcription factor bHLH60-like isoform X1
Refseq	XP_018461654.1	1e-144	PREDICTED: transcription factor bHLH60-like isoform X3
Swissprot	Q3EAI1	2e-70	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A0D3CUF0	1e-78	A0A0D3CUF0_BRAOL; Uncharacterized protein
STRING	Bo6g073190.1	2e-79	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	4e-60	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]