PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08977.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 206aa    MW: 23787.5 Da    PI: 4.1504
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08977.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.31.9e-16391422115
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              p+G+rF+P+d+ + ++yLk+kv g+++++  + +e+ +i+++ P+dLp   + +e+ew+ ++++ + +     +     ++ W   
  Rsa1.0_08977.1_g00001.1  39 PAGCRFRPSDDMMANYYLKNKVLGQPMNARIIPEEChHIFSIPPRDLPG--YPRETEWHCYCRKPNGQ----DT-----QSLWTRV 113
                              89***************************655666689**********4..35789******986643....33.....368**** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapk 115
                              g+d++v++  g+ vg+k+t ++ ++++++
  Rsa1.0_08977.1_g00001.1 114 GEDTTVFDPLGNSVGIKRTYALTEQEEES 142
                              ********************999665544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-2136181IPR003441NAC domain
PROSITE profilePS5100522.11738182IPR003441NAC domain
PfamPF023651.4E-839164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKDLLNECKA PISAKIDDKV KTDLPPFIKT FNTLKRFYPA GCRFRPSDDM MANYYLKNKV  60
LGQPMNARII PEECHHIFSI PPRDLPGYPR ETEWHCYCRK PNGQDTQSLW TRVGEDTTVF  120
DPLGNSVGIK RTYALTEQEE ESDDISLPGE IEPPRQEWFI EEISLPSSVA DTDLVLCHVI  180
LNKIEKEEAY EEEEDDDDDD DGEEEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08977.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444627.11e-134PREDICTED: uncharacterized protein LOC108816557
TrEMBLA0A3N6RUN21e-107A0A3N6RUN2_BRACR; Uncharacterized protein
STRINGBo6g072200.16e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2032356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.13e-51NAC family protein