PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09034.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 230aa    MW: 26244.4 Da    PI: 6.5805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09034.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.93e-091272046
                             HHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                   SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl 46
                             +lKKA EL vLCd +++v+ + ++g+l
  Rsa1.0_09034.1_g00001.1  1 MLKKALELTVLCDNKICVLHYNHDGNL 27
                             59***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.19E-10168IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.517134IPR002100Transcription factor, MADS-box
PfamPF003193.2E-5128IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLKKALELTV LCDNKICVLH YNHDGNLVST LPEDQSQVTD ILDKYRNLSD GEKLKKSTNL  60
SQFYNKKLVD EKKRSLTDAE KRKRFTKKVG DFKGSLLDQF RILEDRVRDL RCSHDHHHQS  120
PCLDVVSDKN HNFPEAYSYG FFPANEFPSS LIEEENPLMM SFGPHDLDQQ QSFTNLLMSG  180
DHVSTITDQY LPSPAPSSTL CSSNLHQGKF SVFLFNHETA TFTQLPNSAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09034.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467160.11e-153PREDICTED: agamous-like MADS-box protein AGL93, partial
TrEMBLA0A3P5YBW81e-101A0A3P5YBW8_BRACM; Uncharacterized protein
STRINGBo6g015480.11e-101(Brassica oleracea)
STRINGBo6g015500.11e-101(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.12e-28AGAMOUS-like 53