PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09068.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 419aa    MW: 46745 Da    PI: 6.7037
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09068.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.1e-11151207155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Rsa1.0_09068.1_g00001.1 151 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 207
                              57*******************4444.2344336655.7799999*************98 PP
2AP250.36.1e-16250301155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Rsa1.0_09068.1_g00001.1 250 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 301
                              57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-14151216IPR016177DNA-binding domain
PfamPF008471.3E-8151207IPR001471AP2/ERF domain
CDDcd000185.73E-18151217No hitNo description
SMARTSM003808.3E-20152221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-11152215IPR001471AP2/ERF domain
PROSITE profilePS5103216.963152215IPR001471AP2/ERF domain
PRINTSPR003673.0E-6153164IPR001471AP2/ERF domain
PfamPF008472.6E-10250301IPR001471AP2/ERF domain
CDDcd000182.50E-11250309No hitNo description
SuperFamilySSF541716.54E-18250310IPR016177DNA-binding domain
PROSITE profilePS5103219.111251309IPR001471AP2/ERF domain
SMARTSM003807.9E-31251315IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18251309IPR001471AP2/ERF domain
PRINTSPR003673.0E-6291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
LKEEAQTSMS DSTALASLFD PPQTHSPKLE DFLGDSSSTQ QQQDSSSSLA QIYDPRLHAG  60
ATAGFASSGD DHHQQNFEEM VVEAGAASEE GCTKEGALSL AVINTDLRCD NGGEIVENSN  120
KKVVVETSTD DVDSKKKKKK KVVETFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA  180
RKGRQGGYDK EDKAARAYDL AALKYWGPAA TTNFQIASYS KELEEMNHMT KQEFIASIRR  240
KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE AYDIAAIKFR  300
GINAVTNFEM NRYDVEAIMK SCFPVGGTAV KRHKQQLSLE SPPPPPCDDR NNQQRLLLPS  360
PSSTSPELDP NSIPCGIPFE SSVLYHHHQS FLQYYPAVPD PTMVQVPMMN QADQFLMWY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09068.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486434.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X2
RefseqXP_018488461.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X2
SwissprotQ6J9N81e-172AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLM4E6J00.0M4E6J0_BRARP; Uncharacterized protein
STRINGBra024394.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-151AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]