PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09092.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 166aa    MW: 18426 Da    PI: 6.8649
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09092.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.26.4e-39141141100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aCk+lrrkC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+++l+yeA ar+rdPvyG+vg++++lq+
  Rsa1.0_09092.1_g00001.1  14 PCGACKFLRRKCVSGCVFAPYFDAEQgTATFAAVHKVFGASNASKMLLRLPLHKRLDAVATLCYEALARLRDPVYGSVGHLFSLQH 99 
                              7***********************9988********************************************************** PP

                   DUF260  86 qleqlkaelallkee 100
                              q+++l+ae+a+++++
  Rsa1.0_09092.1_g00001.1 100 QVMNLQAEIAHVQAR 114
                              **********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.9813115IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-3814112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTGNLNGSGR GEGPCGACKF LRRKCVSGCV FAPYFDAEQG TATFAAVHKV FGASNASKML  60
LRLPLHKRLD AVATLCYEAL ARLRDPVYGS VGHLFSLQHQ VMNLQAEIAH VQARLSTFQR  120
FSVIPTQQMQ QPPFDLAHNN EYPMDFVWEE EQLHQAGNED GELAMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-361312610124LOB family transfactor Ramosa2.1
5ly0_B8e-361312610124LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09092.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-121AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436454.11e-121PREDICTED: LOB domain-containing protein 19-like
RefseqXP_018436455.11e-121PREDICTED: LOB domain-containing protein 19-like
SwissprotO221322e-83LBD19_ARATH; LOB domain-containing protein 19
TrEMBLV4KMP16e-90V4KMP1_EUTSA; Uncharacterized protein
STRINGXP_006397722.11e-90(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.19e-86LOB domain-containing protein 19