PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09258.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 221aa    MW: 24949.7 Da    PI: 9.7
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09258.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11148194355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + h  +Er+RR+++ ++f  L  l+P +      K +Ka++L  A+++Ik+Lq
  Rsa1.0_09258.1_g00001.1 148 QEHILAERKRREKLTQRFVALSALIPGL------KKDKASVLGDAIKHIKYLQ 194
                              56999***********************......99****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-15143211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.617145193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9148194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-15149205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-11150197No hitNo description
SMARTSM003535.7E-13151199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MATKMNVLST KWTSELDIEE YNIIHQYHMN SLIGDFPQSL SSLNDTTTCY NFGASCNDDL  60
VEDQKPSKIL KTTHESPNLP LYPFLNSTSP LPQPSSRILS FEKMGLKVMN HKSPNLIFIP  120
SEEVGSPDLI RRGTKRAQPL TRSPSNAQEH ILAERKRREK LTQRFVALSA LIPGLKKDKA  180
SVLGDAIKHI KYLQESVNEY EKQKKGRTLE SVVLVTKSLL V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158ERKRRE
2154159RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09258.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437993.11e-160PREDICTED: transcription factor bHLH18
SwissprotQ1PF171e-85BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A3P6GR781e-139A0A3P6GR78_BRAOL; Uncharacterized protein
STRINGBo8g100910.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.15e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]