PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_09308.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 255aa MW: 28697.2 Da PI: 4.787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_09308.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.8e-06	137	172	14	54
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ +++ L +++P+ kK+s a+iLe++ +YI L Rsa1.0_09308.1_g00001.1 137 RKVSDRIRSLEKIMPWE-----KKMSLAAILEETHKYITFL 172 57899*********9.....8*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.591	123	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-6	138	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-5	138	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MESGYEFDAL SELPPLPQVY APPPMEYYHP YDDDIESLPP FPQSDFTPHG GGFITFSDTH 60 QDSSLSLLTR DYLTESNLFS HDVVAATPFL HLPDLKSVEE PPSLSLAPPS VARHNSQRHV 120 NNNAKSVASQ PPVHGARKVS DRIRSLEKIM PWEKKMSLAA ILEETHKYIT FLHSQIASLR 180 WMPLDSVYPA KPEEEEEEEV GEGNSLLKSL TRQQLLQVIA NSPGSRNVLY TQGVCVFSYE 240 QLLSLQMMAE STRNF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_09308.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489596.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH117
Swissprot	Q9LRJ4	7e-63	BH117_ARATH; Transcription factor bHLH117
TrEMBL	M4ERA1	1e-111	M4ERA1_BRARP; Uncharacterized protein
STRING	Bra031324.1-P	1e-112	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	3e-58	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]