PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_09702.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 241aa MW: 25073 Da PI: 10.8713

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_09702.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.9	3.7e-38	28	181	2	94
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++ s sss Rsa1.0_09702.1_g00001.1 28 AVKKPPPKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStSSLSTSSSFT--- 110 79**************************************************************9999977743333333322... PP TCP 87 sg....................................................................kaaksa 94 + + Rsa1.0_09702.1_g00001.1 111 -LgkrgvregegevgaglgggggltvghtmgaslvsgggfwavparpdfgqvwsfagappemlfaqqqqpA----T 181 .0223455667777788888888888888888888888888888888888888876666666666533221....2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.178	34	88	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.0E-34	35	195	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MTSNDGSVPN GVIVEQTSSA VNKGTLNAVK KPPPKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST SSLSTSSSFT LGKRGVREGE 120 GEVGAGLGGG GGLTVGHTMG ASLVSGGGFW AVPARPDFGQ VWSFAGAPPE MLFAQQQQPA 180 TLFVRHQQQQ QQQQQASAAT AMGEASAARV GNYLPGHHLN LLASLSGGNT GSGRREGNDS 240 R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_09702.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018476155.1	1e-174	PREDICTED: transcription factor TCP21-like
Refseq	XP_018476156.1	1e-174	PREDICTED: transcription factor TCP21-like
Swissprot	Q9FTA2	1e-111	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A0D3B0A0	1e-118	A0A0D3B0A0_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6QFI3	1e-118	A0A3N6QFI3_BRACR; Uncharacterized protein
TrEMBL	A0A3P6AN88	1e-118	A0A3P6AN88_BRAOL; Uncharacterized protein
STRING	Bo3g004850.1	1e-119	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	1e-44	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]