PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09887.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 195aa    MW: 22556.2 Da    PI: 6.5077
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09887.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30103161159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYG+K+++gs+fpr+Y++C+ ++C vkkk+er++++p++v +tYeg+Hnh+
  Rsa1.0_09887.1_g00001.1 103 LDDGYKWRKYGKKPIRGSPFPRHYHKCSNPNCIVKKKIERDTSNPEYVLTTYEGRHNHP 161
                              59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-2893163IPR003657WRKY domain
PROSITE profilePS5081129.21898163IPR003657WRKY domain
SuperFamilySSF1182902.22E-25101163IPR003657WRKY domain
SMARTSM007741.2E-31103162IPR003657WRKY domain
PfamPF031064.8E-22104161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MNYPSNPNPS FIDFPETFAS DDYDDAFQMI MEQISLEDHS PTLSWNSCEK LLATEITSPL  60
QTNLVTSPMS LEIEDKTEIK KRKRHKDDQI IHVFKTKSIE VALDDGYKWR KYGKKPIRGS  120
PFPRHYHKCS NPNCIVKKKI ERDTSNPEYV LTTYEGRHNH PSPSVVYCDS DDSDLTSLNT  180
LSFQTRTYNY SHSAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-231031641778Probable WRKY transcription factor 4
2lex_A1e-231031641778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00270DAPTransfer from AT2G21900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09887.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300660.0KF430066.1 Brassica rapa WRKY transcription factor 59 (WRKY59) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482206.11e-145PREDICTED: probable WRKY transcription factor 59
SwissprotQ9SJ095e-90WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLA0A078FSM51e-128A0A078FSM5_BRANA; BnaA04g12540D protein
TrEMBLA0A3P6CVV21e-128A0A3P6CVV2_BRAOL; Uncharacterized protein
TrEMBLM4ENA31e-128M4ENA3_BRARP; Uncharacterized protein
TrEMBLV5RF011e-128V5RF01_BRACM; WRKY transcription factor 59
STRINGBra030273.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.13e-83WRKY DNA-binding protein 59