PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_10134.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 595aa MW: 64221.1 Da PI: 6.2005

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_10134.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	7.9e-09	273	321	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Rsa1.0_10134.1_g00001.1 273 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 321 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-17	268	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.29E-11	268	325	No hit	No description
PROSITE profile	PS50888	15.478	270	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-17	271	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-6	273	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	276	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MDTSEKEEFS GEKRNDSNPA DWRVSGSNHV SAPPFGSYPT ENLITASCSP SQMMDSFGQT 60 LWYDPTNVQA VGYGGSSSSS CFRGGMDWSL PNLLPPKGNG LFLPNASSFL PPSMAQFPAD 120 SGFIERAARF SLFSDMVNQP LGSPESVGLF VQGQCPSSEV NVGGVAHNNV IRCSEQGSKP 180 NVSEDTQSSG QKGGETSSKG FDSKKRKRNR QSSEADQSQR SEEEAENNGG DKKEQSPNSP 240 GNKTNSGKQQ GKQASDPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC 300 NKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQMDF YLEGLLAKDV RELQLRGGSS 360 SATPFPTQNM SMVYPPLPHG FMQQQTLSSV GRTISSPLSP MNGGYKRQET NGWEGDLQNV 420 IHINYGAGDV PSDPEAAAAT EEEEAAGLSS DDRRVVAPLA PPPVQFSLIS LRLPDLGVVV 480 VVGGSLLEAF FRLCSGFFLP SLSSSLVVFA SVLCVSFFGS RGGSIVVGRL CFLVAFGCDG 540 RIPFGVVNFP ARGSRIGGFV PLHFSVEACE VNWFLFLLDG SLLVPVVRQG LFRSC

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MDTSEKEEFS GEKRNDSNPA DWRVSGSNHV SAPPFGSYPT ENLITASCSP SQMMDSFGQT  60
LWYDPTNVQA VGYGGSSSSS CFRGGMDWSL PNLLPPKGNG LFLPNASSFL PPSMAQFPAD  120
SGFIERAARF SLFSDMVNQP LGSPESVGLF VQGQCPSSEV NVGGVAHNNV IRCSEQGSKP  180
NVSEDTQSSG QKGGETSSKG FDSKKRKRNR QSSEADQSQR SEEEAENNGG DKKEQSPNSP  240
GNKTNSGKQQ GKQASDPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC  300
NKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQMDF YLEGLLAKDV RELQLRGGSS  360
SATPFPTQNM SMVYPPLPHG FMQQQTLSSV GRTISSPLSP MNGGYKRQET NGWEGDLQNV  420
IHINYGAGDV PSDPEAAAAT EEEEAAGLSS DDRRVVAPLA PPPVQFSLIS LRLPDLGVVV  480
VVGGSLLEAF FRLCSGFFLP SLSSSLVVFA SVLCVSFFGS RGGSIVVGRL CFLVAFGCDG  540
RIPFGVVNFP ARGSRIGGFV PLHFSVEACE VNWFLFLLDG SLLVPVVRQG LFRSC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_10134.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
GenBank	AY128299	0.0	AY128299.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.
GenBank	BT002259	0.0	BT002259.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018446680.1	0.0	PREDICTED: transcription factor bHLH49
Refseq	XP_018446685.1	0.0	PREDICTED: transcription factor bHLH49
Refseq	XP_018446694.1	0.0	PREDICTED: transcription factor bHLH49
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A3N6QHI2	0.0	A0A3N6QHI2_BRACR; Uncharacterized protein
STRING	Bo2g062450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]