PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10267.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 345aa    MW: 38156.3 Da    PI: 5.5183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10267.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.5e-12162204248
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 
                              +  GVr +  +g+W+AeIr p     + ++++lg++ t eeA ka+  
  Rsa1.0_10267.1_g00001.1 162 KPVGVRLRQ-SGKWAAEIRNPI----TkTKVWLGTYATLEEAEKAYAD 204
                              678***999.7*********72....36*****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-7162202IPR001471AP2/ERF domain
PROSITE profilePS5103215.396162220IPR001471AP2/ERF domain
SMARTSM003804.9E-8162216IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-12164209IPR016177DNA-binding domain
CDDcd000185.20E-15164202No hitNo description
Gene3DG3DSA:3.30.730.104.5E-15165209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSAVSESALI LSLFHVSSPT RSSSSTSSAL FFGLTTVLNS LRFCSKQRLV LEVPSLSMGD  60
SQETKVTLFH SSLKQSPLCL IQQVLVRDFK VLKSDMKKQV RGRKVRIVVS DPYATDESSS  120
DEWFECKPTK VKRIVHEINL PFQKLSDDVK SSRRRASMRL NKPVGVRLRQ SGKWAAEIRN  180
PITKTKVWLG TYATLEEAEK AYADKKVEFD ASVASSVNSQ CLRSAAPKEK MSLSEDVAAC  240
GDLTKEGFDL SGLEIPDLSF LGAEEKCKVA GANAAGEIDF DYFFKEEDYG HLFDDFSVLD  300
NVNNIGLASE LPDCDFTDVE LEHGDSKFAF ADQLTPPPPL NISCP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_10267.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479288.11e-180PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_018479293.11e-180PREDICTED: ethylene-responsive transcription factor ERF116
SwissprotQ8GW175e-59EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLA0A3P5YGA10.0A0A3P5YGA1_BRACM; Uncharacterized protein
STRINGBra024743.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.23e-61ERF family protein