PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10397.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 54aa    MW: 6191.68 Da    PI: 4.4762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10397.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-112152132
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                             +g+WT+eEd +lv+ v  +G  +W+ Iar  g
  Rsa1.0_10397.1_g00001.1 21 KGPWTEEEDAILVNFVSIHGDARWNHIARSAG 52
                             79***************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-111550IPR009057Homeodomain-like
PROSITE profilePS5129415.6861654IPR017930Myb domain
SuperFamilySSF466892.76E-91650IPR009057Homeodomain-like
PfamPF002494.4E-92152IPR001005SANT/Myb domain
CDDcd001677.49E-72349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MENYERNLNS PAHEEDSDVR KGPWTEEEDA ILVNFVSIHG DARWNHIARS AGIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_10397.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1441919e-61KJ144191.1 Brassica rapa subsp. chinensis MYB transcription factor (MYB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481452.13e-30PREDICTED: transcription factor MYB57-like
TrEMBLA0A078GQN57e-28A0A078GQN5_BRANA; BnaC04g51450D protein
TrEMBLA0A0D3C6P08e-28A0A0D3C6P0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D1C88e-28A0A3P6D1C8_BRAOL; Uncharacterized protein
STRINGBo4g198510.11e-28(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.13e-29myb domain protein 2