PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_10829.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 334aa MW: 38196.9 Da PI: 9.2101

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_10829.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.4	2.5e-38	83	244	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i+++t++ Rsa1.0_10829.1_g00001.1 83 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKITSSlsnqfkhggeesqtrpaigsmh 168 5799**********************************************************9998888888876666665432 PP TCP 66 ..ssssasec..........eaesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertre 128 s + + +s + + + k+k q ++ +l+k+ r++ar+ra++rt+e Rsa1.0_10829.1_g00001.1 169 tsS-----DLckigsmwkveD------GGS----NtnstetrenkvDGRLMRGKRKMLQPRTPILKKLSKDARERARERAKDRTKE 239 220.....2223332222211......222....022234455556333344455555666666799*************** PP TCP 129 kmrik 133 km ++ Rsa1.0_10829.1_g00001.1 240 KMLKR 244 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-40	84	242	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.724	85	143	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.075	223	240	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
APSSFSQFEF VPDFALLPYL HQQNNGHNDN KTTSDHHHPS LLPLNNSIGE SLAEPSETIT 60 THIEDSQRNS TFQDPKMNKV KKPSRTDRHS KIKTAKGTRD RRMRLSLDVA KELFGLQDML 120 GFDKASKTVE WLLTQAKPEI IKITSSLSNQ FKHGGEESQT RPAIGSMHTS SDLCKIGSMW 180 KVEDGGSNTN STETRENKVD GRLMRGKRKM LQPRTPILKK LSKDARERAR ERAKDRTKEK 240 MLKRISQVNI LDEEAHNHHD EIAKDNKSHV NCKSFEVAPC EEEIEQLLCK NDDFAVCNEF 300 VANKFSSSFP MPNHHRSKET ASSLDQIERR RFYD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_10829.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626114.1	0.0	PREDICTED: transcription factor TCP18-like isoform X4
Swissprot	A1YKT1	1e-141	TCP18_ARATH; Transcription factor TCP18
TrEMBL	A0A078IV77	0.0	A0A078IV77_BRANA; BnaCnng23770D protein
TrEMBL	A0A3P6AJB6	0.0	A0A3P6AJB6_BRAOL; Uncharacterized protein
STRING	Bra001710.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7269	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	1e-134	TCP family protein

Publications ? help Back to Top
Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Niwa M,Endo M,Araki T Florigen is involved in axillary bud development at multiple stages in Arabidopsis. Plant Signal Behav, 2013. 8(11): p. e27167 [PMID:24305631] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Stes E, et al. Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana. J. Exp. Bot., 2015. 66(16): p. 5123-34 [PMID:26136271] Yao C,Finlayson SA Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth. Plant Physiol., 2015. 169(1): p. 611-26 [PMID:26149576] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Seale M,Bennett T,Leyser O BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Development, 2017. 144(9): p. 1661-1673 [PMID:28289131] Otori K,Tamoi M,Tanabe N,Shigeoka S Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis. Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477 [PMID:28471323] Lantzouni O,Klermund C,Schwechheimer C Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings. Plant J., 2017. 92(5): p. 924-938 [PMID:28977719] Yang Y, et al. The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis. PLoS Genet., 2018. 14(3): p. e1007296 [PMID:29570704]