PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_11408.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 148aa    MW: 17044.7 Da    PI: 10.4986
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_11408.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94.1e-161050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +i n+s r++t+ kRr g+lKKA+E+ +LC++++  i++s+
  Rsa1.0_11408.1_g00001.1 10 FIVNNSSRKTTLQKRRRGLLKKAHEIFTLCGINAGAIVYSP 50
                             799************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.45E-18165IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.283161IPR002100Transcription factor, MADS-box
CDDcd002669.45E-22257No hitNo description
PRINTSPR004049.3E-11323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-141051IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MTRRKVKLAF IVNNSSRKTT LQKRRRGLLK KAHEIFTLCG INAGAIVYSP YDPTLRFNQQ  60
EFFQQRITKA DKFLLKKKKD NREVNLTEDM YQFLHIGHLT IPAGGHNKPA LARDLNDLGY  120
LVDQYLNSLN RRIQILEGGS DVEIGESL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_11408.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084924e-62AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458729.11e-78PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK37e-32AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A3P6FJD56e-42A0A3P6FJD5_BRAOL; Uncharacterized protein
STRINGBo5g145000.11e-42(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-29AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]