PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_11704.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 206aa    MW: 22628 Da    PI: 9.8093
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_11704.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.6e-073558225
                             -S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                             k ++C  f+ t  C++G++C+F H
  Rsa1.0_11704.1_g00001.1 35 KSKPCTKFFSTSGCPFGENCHFLH 58
                             7789******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-63459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-83558IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-53558IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDTSRKRGPP EAGSNGGGGF KKSKLEMEST GLGSKSKPCT KFFSTSGCPF GENCHFLHYV  60
PGGYNAVAQL TNMAPPMPQV SRNMQGPGGG LGRFSVPGHV SSFGASATAK ISSDGHHINV  120
EIHFEFLCAY TANKGVKIPQ PSFPPQKQTQ TCRAHQVKWL VMKAEIPAAH QQDQMVHLFQ  180
LLLLHQYCFQ MLYLFRYLKL IRGQDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_11704.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535311e-78AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491218.11e-70PREDICTED: zinc finger CCCH domain-containing protein 36-like
SwissprotQ9C7C32e-53C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLE4MYD42e-55E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U62e-55V4M8U6_EUTSA; Uncharacterized protein
STRINGXP_006407365.13e-56(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-46C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]