PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_11827.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 196aa    MW: 21671.6 Da    PI: 10.3464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_11827.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17105138134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Rsa1.0_11827.1_g00001.1 105 CMHCEITKTPQWRLGPMGPKTLCNACGVRYKSGR 138
                              99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.63599135IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-1599149IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-15103162No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14103136IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-12104151No hitNo description
PfamPF003201.6E-15105138IPR000679Zinc finger, GATA-type
PROSITE patternPS003440105130IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
ESSSSSSQTT NTTSLVLPGK HGRPRTKRPR PHVHEKDGVK DIVDSCLIVR IPKQFLSDHS  60
KMITKKKKKK AKVTSSSSSS GIDLEVNGNI NVDSYSSEQN PVRKCMHCEI TKTPQWRLGP  120
MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FTPALHSNSH KKVAEMRSKR CKGGSHTTEE  180
NDLQDLIPNN AYIGVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12630KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_11827.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896170.0AC189617.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH102A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465287.11e-142PREDICTED: GATA transcription factor 8-like
RefseqXP_018465288.11e-142PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV301e-93GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A0D3CTV41e-107A0A0D3CTV4_BRAOL; GATA transcription factor
TrEMBLA0A3P6FUL11e-107A0A3P6FUL1_BRAOL; GATA transcription factor
STRINGBo6g068260.11e-108(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-86GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]