PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_11839.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 413aa MW: 45003.6 Da PI: 6.1809

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_11839.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	3e-31	210	268	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ Rsa1.0_11839.1_g00001.1 210 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 268 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	203	270	IPR003657	WRKY domain
PROSITE profile	PS50811	33.361	204	270	IPR003657	WRKY domain
SuperFamily	SSF118290	1.02E-26	207	270	IPR003657	WRKY domain
SMART	SM00774	1.5E-38	209	269	IPR003657	WRKY domain
Pfam	PF03106	3.6E-26	211	268	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDNFQGDLTD VVRGIGSRHM TSSPGPPEGP SPSSLSPPLT SDFHVDFPSF ANSEMNPFGD 60 PFVSMTDPLL NLPANFSGAG DSKSNNSFAV FPNVTVDDHI KSQCSVFPRI RISQRNIIQD 120 ASKCNSPAMA TSSVAAASPW GMISVDSTNS PRNCLLVDNH NITSSSSQIQ ISSSPQNFGI 180 KRRKGQGKKV VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG 240 CPARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSSSSSSSNP CSKSATATTS 300 ASSRVSQNKD EPNKSHLPFT STSHVAKTVK EEDVEKCQEN IEFDDVDDTY RPEFQHHLGD 360 FFADLDDLEE DFLTMLCTQG FSGDNSGGGN LDNKRMIPDV FSDFFDDDSS RSL

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDNFQGDLTD VVRGIGSRHM TSSPGPPEGP SPSSLSPPLT SDFHVDFPSF ANSEMNPFGD  60
PFVSMTDPLL NLPANFSGAG DSKSNNSFAV FPNVTVDDHI KSQCSVFPRI RISQRNIIQD  120
ASKCNSPAMA TSSVAAASPW GMISVDSTNS PRNCLLVDNH NITSSSSQIQ ISSSPQNFGI  180
KRRKGQGKKV VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG  240
CPARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSSSSSSSNP CSKSATATTS  300
ASSRVSQNKD EPNKSHLPFT STSHVAKTVK EEDVEKCQEN IEFDDVDDTY RPEFQHHLGD  360
FFADLDDLEE DFLTMLCTQG FSGDNSGGGN LDNKRMIPDV FSDFFDDDSS RSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-24	188	271	6	80	Disease resistance protein RRS1
5w3x_D	2e-24	188	271	6	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_11839.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593147	0.0	KM593147.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY53) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481188.1	0.0	PREDICTED: probable WRKY transcription factor 35
Swissprot	O64747	0.0	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A3P6C935	0.0	A0A3P6C935_BRACM; Uncharacterized protein
STRING	Bo4g182940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-160	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]