PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_11966.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 232aa MW: 24543.1 Da PI: 4.7821

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_11966.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	134.7	9.7e-42	60	231	2	171
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++++le+A+a+++g++e a+++Lar+s++ s+++++ ++l+ +++ AL++r++ +++++++ +e++++++l++e+ Rsa1.0_11966.1_g00001.1 60 RQTVLEIATAIAEGKTEIASEILARVSQTPSQRRNSEEKLVDFMVTALRSRINP--------AAAESSAQLYGKEHINSTQLLYEL 137 6889***********************************************9........22233333359********* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg........skeeleetge 163 sP++k+++++aN aIl+a + ++ H++Df+i++G+Q+ +Ll+aL++R+ ++pp ++iT+v + + g + +l+++g+ Rsa1.0_11966.1_g00001.1 138 SPCFKLGFMAANLAILDANDDATSFHVVDFEIGEGGQYFNLLHALSTRRsgKNPPVVKITAVTNVSDGfsvaggdrGEGRLKTVGD 223 ******************************************99977779******8888999999999999** PP GRAS 164 rLakfAee 171 rL+++ ++ Rsa1.0_11966.1_g00001.1 224 RLSELGDR 231 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	25.15	33	232	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-39	60	231	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
DEGGDDDVSV ITHSNSDWLH GLMTPNPNPN PVLSSSSPSS SSSSSSPSTA STTTSAACSR 60 QTVLEIATAI AEGKTEIASE ILARVSQTPS QRRNSEEKLV DFMVTALRSR INPAAAESSA 120 QLYGKEHINS TQLLYELSPC FKLGFMAANL AILDANDDAT SFHVVDFEIG EGGQYFNLLH 180 ALSTRRSGKN PPVVKITAVT NVSDGFSVAG GDRGEGRLKT VGDRLSELGD RL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_11966.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018457492.1	1e-163	PREDICTED: scarecrow-like protein 8
Swissprot	Q9FYR7	2e-87	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	A0A0D3E8K5	1e-113	A0A0D3E8K5_BRAOL; Uncharacterized protein
STRING	Bo9g083130.1	1e-113	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4350	28	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	6e-78	SCARECROW-like 8