PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_12047.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 179aa MW: 20138.4 Da PI: 8.6621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_12047.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	74	122	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + ++ + a++L + ++Y++sLq Rsa1.0_12047.1_g00001.1 74 SHSLAERVRRGKINERLKCLQDIVPGC---YKVAMGMATMLDEIINYVQSLQ 122 8************************...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-16	68	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.53E-9	68	126	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-15	70	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.034	70	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-7	74	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-9	76	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGFIHTYTKI HDSDESSSRN DTKKRKTLTS SVSTSENSGT KNSYARKGRS KSREEEKERE 60 DVHVRVKRGQ ATDSHSLAER VRRGKINERL KCLQDIVPGC YKVAMGMATM LDEIINYVQS 120 LQNQVEFLST ELTAASSYYD FNSEADAVDS MQKAKAREAV EMGQGRDGSS VFHPSSWTL

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_12047.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488585	1e-151	AF488585.1 Arabidopsis thaliana clone bHLH050 putative bHLH transcription factor mRNA, partial sequence.
GenBank	AK118781	1e-151	AK118781.1 Arabidopsis thaliana At1g73830 mRNA for putative bHLH transcription factor (bHLH050), complete cds, clone: RAFL21-11-M10.
GenBank	BT006055	1e-151	BT006055.1 Arabidopsis thaliana clone U51368 putative helix-loop-helix DNA-binding protein (At1g73830) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013674822.1	2e-96	transcription factor BEE 3-like
Swissprot	Q8GWK7	3e-86	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	M4CV67	7e-95	M4CV67_BRARP; Uncharacterized protein
STRING	Bra008113.1-P	1e-95	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	6e-79	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]