PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_12193.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 80aa    MW: 9092.26 Da    PI: 6.205
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_12193.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06538235
                 zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                             e + C+ ++e e+ lfC+ +   lC  C ++ H 
  Rsa1.0_12193.1_g00001.1  5 ERHHCDFCGEREAVLFCRADTAKLCLPCDQHVHT 38
                             6789******99******************9994 PP
2zf-B_box25.82.2e-084976330
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedCl 30
                              ++C+++++++++  C++++  lC+dC 
  Rsa1.0_12193.1_g00001.1 49 SQICDNCGNEPVSVRCFTDNLVLCQDCD 76
                             689************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-11451IPR000315B-box-type zinc finger
PROSITE profilePS501199.471451IPR000315B-box-type zinc finger
CDDcd000212.30E-5839No hitNo description
PROSITE profilePS501199.24780IPR000315B-box-type zinc finger
PfamPF006433.0E-64980IPR000315B-box-type zinc finger
CDDcd000211.97E-55180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSSSERHHCD FCGEREAVLF CRADTAKLCL PCDQHVHTAN LLSKKHVRSQ ICDNCGNEPV  60
SVRCFTDNLV LCQDCDWDVH
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_12193.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461608.14e-53PREDICTED: zinc finger protein CONSTANS-LIKE 15-like
SwissprotQ9C7E84e-48COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A078FRD48e-50A0A078FRD4_BRANA; BnaA07g08670D protein
TrEMBLA0A078JIT77e-49A0A078JIT7_BRANA; BnaCnng51750D protein
TrEMBLA0A0D3D6C57e-49A0A0D3D6C5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BHM51e-49A0A3P6BHM5_BRACM; Uncharacterized protein
TrEMBLA0A3P6EA856e-49A0A3P6EA85_BRAOL; Uncharacterized protein
TrEMBLM4EMQ02e-49M4EMQ0_BRARP; Uncharacterized protein
STRINGBra030070.1-P3e-50(Brassica rapa)
STRINGBo7g048510.11e-49(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.12e-50B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]