PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_12212.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 421aa    MW: 45922.2 Da    PI: 9.7928
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_12212.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.46.8e-1092111827
                              GGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                              +f+r+GtCkyG++Ck++H++
  Rsa1.0_12212.1_g00001.1  92 HFMRMGTCKYGASCKYHHPR 111
                              8*****************96 PP
2zf-CCCH33.28.5e-11299321426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              ++C++++rt +Ck+G +C+F+H+
  Rsa1.0_12212.1_g00001.1 299 KECSYYMRTSQCKFGLTCRFNHP 321
                              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.3988111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.04791112IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-792111IPR000571Zinc finger, CCCH-type
SuperFamilySSF525401.12E-23124286IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.9E-12124278IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3002.9E-4125276IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003644.3E-6127142No hitNo description
PRINTSPR003644.3E-6202216No hitNo description
PROSITE profilePS5010312.549295323IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013296322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.24E-5296324IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8298321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MERYGRAGEE GPRSDPSIEW TSHGVQTGVE ASMWRLGLSG GGAGGGGGGG EAYPERSKCR  60
FNHPQDRGAV VGGMRGGVGG DGALPDRMGQ PHFMRMGTCK YGASCKYHHP RQGGGGSVAP  120
VSLSVQVIGI WGRGSMGRSA LAIHVYESVS YNFEAHCFLD DVRRISLHSR KSHLREELLS  180
KMQGEGLSTK SSHKCLKAIK ARLKNKKILL VANDVNKIEQ LDALGEEFSW SGPGSRVVIT  240
TQDRLLLSSS GVKSVYEVEF LKCCEVRKLF RSEAFKQRED PVGLEQSTYR HMNNFLGKKE  300
CSYYMRTSQC KFGLTCRFNH PVPQPQQKQT QTIYPTLQSQ PMPSSQQYGL VLTRPPSLLS  360
GSYLPSPYGP PPRVLPPGMV TYPNWNSYQA SLTAMPSPGT GTQPTIRSSS VYGGVALLSP  420
S
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_12212.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895070.0AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896070.0AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
GenBankFJ8427950.0FJ842795.1 Brassica rapa subsp. pekinensis isolate BrTN8 disease resistance protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SQU43e-45C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLD1GEI63e-93D1GEI6_BRARP; Disease resistance protein
TrEMBLM4DHQ02e-93M4DHQ0_BRARP; Uncharacterized protein
STRINGBra016027.1-P3e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.15e-38C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]