PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_12537.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 224aa MW: 24553.4 Da PI: 9.6767

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_12537.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102	1e-31	47	219	4	122
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssas 83 ++++ +++h kv+gR RR+Rl+ caar+F+L++eLG+++ ++t++WLl+ a+p+i+ +tgt+ ++a+++ +a++ + ++ Rsa1.0_12537.1_g00001.1 47 QTKSAKDRHLKVEGRSRRIRLPPVCAARIFQLTRELGHKSEGETLQWLLRHAEPSIISATGTGIKPATDSvsqpppQAVDLNLDVG 132 67899*********************************************************777774444444333333333333 PP TCP 84 nsssg.................................................kaaksaa.kskksqksaasalnlakesrakar 119 s+s+ + + ++ ++q +++a l++++++ ++ Rsa1.0_12537.1_g00001.1 133 GSRSQlsnglwgnetgfgvgannrttgggldlncgtgflgfdfigssemgfennN--QMHQvGVLNQQMGQEQAKVLHHHHHEAQQ 216 3333355667778888888888888899999999999999999988888887532..22222222333333334555555554444 PP TCP 120 ara 122 ++a Rsa1.0_12537.1_g00001.1 217 QNA 219 444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.1E-25	50	215	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.463	51	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDPKNPPNLS NPSDKKKKTE TEVKVVLNTV EGKRKWKPKD NEGREIQTKS AKDRHLKVEG 60 RSRRIRLPPV CAARIFQLTR ELGHKSEGET LQWLLRHAEP SIISATGTGI KPATDSVSQP 120 PPQAVDLNLD VGGSRSQLSN GLWGNETGFG VGANNRTTGG GLDLNCGTGF LGFDFIGSSE 180 MGFENNNQMH QVGVLNQQMG QEQAKVLHHH HHEAQQQNAD KQGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_12537.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480871.1	1e-143	PREDICTED: transcription factor TCP6
Swissprot	Q9FLM6	4e-63	TCP6_ARATH; Transcription factor TCP6
TrEMBL	A0A3P6CZ79	1e-113	A0A3P6CZ79_BRACM; Uncharacterized protein
STRING	Bra025528.1-P	1e-104	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	2e-58	TCP family protein

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]