PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_12930.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 156aa    MW: 17486.6 Da    PI: 4.8398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_12930.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-16244955
                      AP2  9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             ++ +g+W++eIrdp     + +r++lg+f taeeAa a++ a+k+++g
  Rsa1.0_12930.1_g00002.1  2 RP-WGKWASEIRDPE----KgARVWLGTFNTAEEAAMAYDVAAKRIRG 44
                             56.**********73....24************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.863152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-28153IPR001471AP2/ERF domain
CDDcd000187.64E-31154No hitNo description
SMARTSM003802.2E-29158IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-19253IPR016177DNA-binding domain
PfamPF008477.6E-10244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
KRPWGKWASE IRDPEKGARV WLGTFNTAEE AAMAYDVAAK RIRGDKAKLN FPDLLHNPPP  60
AIPTLPRQDN QPPVKKLCVS SQSELTQSSF PGECIGFGNG DEFRNMSYGY DLKQQISSLE  120
SFLELDGITP EHPSQLHETG SEVDLWMLHD VIASYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20152860ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-201521163ATERF1
3gcc_A9e-201521163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_12930.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893171e-156AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486289.11e-105PREDICTED: ethylene-responsive transcription factor RAP2-3-like
SwissprotP427363e-79RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A078ITY76e-93A0A078ITY7_BRANA; BnaCnng27470D protein
TrEMBLA0A398A4X35e-93A0A398A4X3_BRACM; Uncharacterized protein
TrEMBLA0A3N6TP034e-93A0A3N6TP03_BRACR; Uncharacterized protein
TrEMBLM4CBR05e-93M4CBR0_BRARP; Uncharacterized protein
STRINGBra001640.1-P8e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-71ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]