PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13006.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 331aa    MW: 38195 Da    PI: 6.9078
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13006.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05239262123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              y+Cp+C+ +F ++  +  Hi++ H
  Rsa1.0_13006.1_g00002.1 239 YTCPKCNNVFDTSQKFAAHISSvH 262
                              9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.96E-5236265No hitNo description
PROSITE profilePS501579.556239267IPR007087Zinc finger, C2H2
PROSITE patternPS000280241262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MYSIPNVLNS YGDNTMNLHG SVPIQMNSSF GDHETKRFRS MFTSDITNHH GVFSPSHVSN  60
SYQDSHVYSS SFGYNNPHAA YQMRTNMVSD VVDYFSINDN PHLSQVSITQ TITKRYSAIV  120
PTSSLITAQN EYERAMNHNI SNPSFCPQTF VDNHSTYPQT FVDNQNNILN PTPLNTVFPR  180
NLDQFSFSPK HHHDQHVPHR RPVIKRRRFE EIFDGFDFEE SGVYDGRTHS LPYEKYGPYT  240
CPKCNNVFDT SQKFAAHISS VHYKNETVEE KAKRYNARNK KRFRKIDQSQ MIEPEERVFE  300
ENGGNNNIAS GIEASQRQLV VKEEPTYDVV D
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_13006.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443256.10.0PREDICTED: uncharacterized protein LOC108815093
TrEMBLA0A078JYP10.0A0A078JYP1_BRANA; BnaAnng34870D protein
TrEMBLA0A397XTF80.0A0A397XTF8_BRACM; Uncharacterized protein
STRINGBra002447.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-100C2H2-like zinc finger protein