PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_13657.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 423aa MW: 47075.4 Da PI: 4.2345

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_13657.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	125.9	1.8e-39	229	325	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdq 86 +fqr+w+eeDei++LqG+id++++tg++p+dd +a+ye +k+sisf+v+k+q++eKir+LKkKf ++++k +k+g+ p+fsk+hd Rsa1.0_13657.1_g00002.1 229 YFQRVWTEEDEITVLQGIIDYQNETGANPFDDKNALYELLKQSISFNVTKTQFSEKIRSLKKKFDNNREKeKKRGEAPAFSKPHDL 314 8***************************************************************99997899******** PP DUF573 87 kifelskkiWg 97 ++f lsk +Wg Rsa1.0_13657.1_g00002.1 315 ETFRLSKFVWG 325 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.1E-33	230	325	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MTMNLEPTSS SSSYEDDSSS SEEETDSPVL KASLPVTTAN SSSSEEEEET DSESETEPVH 60 DSKDGSKPKI TANSLSDSPV VKPPADSSNK VEAPMNTANS SSEEEETDSE SETEQEEVEA 120 VKPPPDSSSK VPVNSSSEEE EEETDSESET DPVETSSKLE TTEVEPDSPA VKPPTDSNKV 180 ETSQNPFVTK KRPIDETMDD GEAKRIKPVS GGDDDDKKIT VFQETKKNYF QRVWTEEDEI 240 TVLQGIIDYQ NETGANPFDD KNALYELLKQ SISFNVTKTQ FSEKIRSLKK KFDNNREKEK 300 KRGEAPAFSK PHDLETFRLS KFVWGGDGIM SNAIEVKPPV LKLVAPAAVK KQEFVSIVEP 360 LARFGVDDLF AKKGWSKLSL EDKKRLEVEW EALQLEELSF YARKSRFIHD AVTKMAEASK 420 QDN

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MTMNLEPTSS SSSYEDDSSS SEEETDSPVL KASLPVTTAN SSSSEEEEET DSESETEPVH  60
DSKDGSKPKI TANSLSDSPV VKPPADSSNK VEAPMNTANS SSEEEETDSE SETEQEEVEA  120
VKPPPDSSSK VPVNSSSEEE EEETDSESET DPVETSSKLE TTEVEPDSPA VKPPTDSNKV  180
ETSQNPFVTK KRPIDETMDD GEAKRIKPVS GGDDDDKKIT VFQETKKNYF QRVWTEEDEI  240
TVLQGIIDYQ NETGANPFDD KNALYELLKQ SISFNVTKTQ FSEKIRSLKK KFDNNREKEK  300
KRGEAPAFSK PHDLETFRLS KFVWGGDGIM SNAIEVKPPV LKLVAPAAVK KQEFVSIVEP  360
LARFGVDDLF AKKGWSKLSL EDKKRLEVEW EALQLEELSF YARKSRFIHD AVTKMAEASK  420
QDN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_13657.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444053.1	0.0	PREDICTED: probable transcription factor At1g11510
TrEMBL	A0A397L0N4	8e-96	A0A397L0N4_BRACM; Uncharacterized protein
STRING	Bra038583.1-P	8e-96	(Brassica rapa)
STRING	Bo4g143830.1	6e-96	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	4e-48	DNA-binding storekeeper protein-related transcriptional regulator