PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13724.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20192.5 Da    PI: 10.3421
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13724.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-141050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +i n+s r++tf kR+ g+lKKA+ + +LC++++  ii+s+
  Rsa1.0_13724.1_g00002.1 10 FIVNNSLRKTTFKKRKRGLLKKAHVIFILCGINAGAIIYSP 50
                             799************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.474149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-20395IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-111150IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTRMKVKLAF IVNNSLRKTT FKKRKRGLLK KAHVIFILCG INAGAIIYSP YYPTPEVWPS  60
VEGMNQVITT FRNLPEIDRH NNMFDQQEFV QQRITKADKL LLKKKKDNRE VNLTEDMYRF  120
LQIGQLTIPA GGHSKPALAR DLNDLDYLVD QYLNSLNRRI QILEGGSDVK IGESL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11524LRKTTFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_13724.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084923e-66AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444906.11e-102PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-46AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A3N6SXQ48e-58A0A3N6SXQ4_BRACR; Uncharacterized protein
STRINGBo5g145000.12e-58(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-46AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]