PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13724.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19757 Da    PI: 9.9804
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13724.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.76.1e-0822471742
                             HHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF 17 rngilKKAeELSvLCdaevaviifss 42
                             + g+lKK +E+ +LC++++  ii+s+
  Rsa1.0_13724.1_g00003.1 22 KRGLLKKTHEIFTLCGINAGAIIYSP 47
                             78**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.475146IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-10157IPR002100Transcription factor, MADS-box
CDDcd002662.82E-18282No hitNo description
SuperFamilySSF554551.96E-15292IPR002100Transcription factor, MADS-box
PfamPF003191.3E-52248IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTRRKVKLAF IVNNSSRKXX XKRGLLKKTH EIFTLCGINA GAIIYSPYDP TPEVWPSVEG  60
MNQVITTLRN LPEIDRHNNM VNQQEFVQQR ITKVHQLLLK KKKDNREVNL TEDMYRFLQI  120
GQLTIPAGGH NNPALARDLN DLGYLVYQYL NSLNRRIQIL EGGSDVEIGE SI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_13724.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084928e-33AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444906.11e-102PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-48AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A3P5ZG073e-59A0A3P5ZG07_BRACM; Uncharacterized protein
TrEMBLM4FIU33e-59M4FIU3_BRARP; Uncharacterized protein
STRINGBra041022.1-P5e-60(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-50AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]