PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14164.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 101aa    MW: 10966.5 Da    PI: 10.6258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14164.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-052850123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             +kC  CgksF++   L  H  +H
  Rsa1.0_14164.1_g00002.1 28 FKCMFCGKSFTSYQALAGHKTSH 50
                             89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-42651IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.29E-62652No hitNo description
PfamPF139121.4E-82852IPR007087Zinc finger, C2H2
SMARTSM003550.0022850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7412855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MLARGTVIQP PLTPPLLPRH PSSVHRDFKC MFCGKSFTSY QALAGHKTSH QKSLANKVDV  60
PGRQAPSNSN SQSNVVFSGN GTATNGDNQN KKMVCVWKVT E
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_14164.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488722.13e-31PREDICTED: zinc finger protein AZF1
SwissprotQ9SSW12e-13AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A078FAA39e-26A0A078FAA3_BRANA; BnaA06g25060D protein
TrEMBLA0A078HI699e-26A0A078HI69_BRANA; BnaC03g48520D protein
TrEMBLA0A0D3BEJ89e-26A0A0D3BEJ8_BRAOL; Uncharacterized protein
TrEMBLA0A397Z0X81e-25A0A397Z0X8_BRACM; Uncharacterized protein
TrEMBLA0A3P5YJ629e-26A0A3P5YJ62_BRACM; Uncharacterized protein
STRINGBo3g096410.11e-26(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-15zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]