PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_14221.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 251aa MW: 27792.3 Da PI: 7.4977

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_14221.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	43.4	1.1e-13	133	166	21	58
CBFB_NFYA 21 RakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 Ra+ e+ + ++ pylheSRh+hA+rRpRg+gGrF Rsa1.0_14221.1_g00002.1 133 RARKEA----YQIQKGPYLHESRHQHAMRRPRGTGGRF 166 566665....355789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	17.245	103	169	IPR001289	Nuclear transcription factor Y subunit A
SMART	SM00521	3.0E-6	123	169	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.2E-11	138	166	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MHSKSDVSEV YHHHTSSNGS KSLSNRDESG NKEESLVTTS PQHSGAFDLS SLGGDNSEKS 60 QEPVHPGTTP PLPHPQLVSH AVGWTSSNLY QDPYYAGMMG AYPLAYVPYG GMPHSRMQLP 120 PEMAQEPGTS QGRARKEAYQ IQKGPYLHES RHQHAMRRPR GTGGRFAKKT NTNTDDSRKK 180 AGEKNNACPT QSPTSSNSDQ PEAWSDEYRT THQSEEMQSS AYKTREEVEC LGQQWNNISS 240 NHPSQARLAI K

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_14221.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487136.1	1e-135	PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X1
Swissprot	Q945M9	3e-96	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A3P5ZPV0	1e-108	A0A3P5ZPV0_BRACM; Uncharacterized protein
STRING	Bra001806.1-P	1e-107	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13268	18	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	1e-98	nuclear factor Y, subunit A9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]