PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_14432.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 635aa MW: 73189.3 Da PI: 8.4106

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_14432.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.3	4.5e-22	30	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Yn YA+e+GF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+Hn Rsa1.0_14432.1_g00002.1 30 NYYNCYANEAGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRANDVN-----RVRKETRTGCPAMVRMRQVDSKRWRVVEVALDHN 110 69***************************************9988.....999***************************** PP FAR1 87 Hel 89 H+l Rsa1.0_14432.1_g00002.1 111 HSL 113 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-19	30	113	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-25	232	324	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.755	519	555	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.7E-6	527	552	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.8E-6	530	557	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
EEEEHLVVEG KEFDAPAVGM EFESYDDAYN YYNCYANEAG FRVRVKNSWF KRRSKEKYGA 60 VLCCSSQGFK RANDVNRVRK ETRTGCPAMV RMRQVDSKRW RVVEVALDHN HSLGGSSMYK 120 RTGTKRKCNA DSGDAKTVKV YRARVMDIGN SVTNTTNSTL KKKQFQNSSS SSPDVLNLRR 180 GDPSAVYNYF CRMQLTNPNF FYLMDINEEG RLRNVFWADA FSRVSCSYFS DVIFVDNTYI 240 SGKFEIPLVT LVGVNHHGQT TLLGCGLLAG ETVESYHWLL KVWFGLVKCS PQTVVTDRCK 300 PLEAAVSQVF PRCHHRFSLA HIMRKVPEKL GGLGNYDGVR KALTKAVYET LKVVDFEAAW 360 GFMVHSFGVI DNEWLRSLYE DRARWAPVYL IDTFFAGLAT CRLGETLSPF FERYVHKQTP 420 LKEFLDKYEL ALHRKHREET LADIESLALS TTELKTKCSF ETQLSRVYTR DVFRKFQVEV 480 EEMYSCFSTT QVHVDGPLVI FLVKERVQGE SNRREVRDFE VLYNRSVGEV RCICSCFSFY 540 GYLCRHALSV LNFSGVEEIP LRYVLPRWRK DYKRVHASDN GFVDGTDRVQ RFDQLYKGAL 600 EVVEEGAVSL DRYKVAMQVL EQALDRVHSV EEKQV

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

EEEEHLVVEG KEFDAPAVGM EFESYDDAYN YYNCYANEAG FRVRVKNSWF KRRSKEKYGA  60
VLCCSSQGFK RANDVNRVRK ETRTGCPAMV RMRQVDSKRW RVVEVALDHN HSLGGSSMYK  120
RTGTKRKCNA DSGDAKTVKV YRARVMDIGN SVTNTTNSTL KKKQFQNSSS SSPDVLNLRR  180
GDPSAVYNYF CRMQLTNPNF FYLMDINEEG RLRNVFWADA FSRVSCSYFS DVIFVDNTYI  240
SGKFEIPLVT LVGVNHHGQT TLLGCGLLAG ETVESYHWLL KVWFGLVKCS PQTVVTDRCK  300
PLEAAVSQVF PRCHHRFSLA HIMRKVPEKL GGLGNYDGVR KALTKAVYET LKVVDFEAAW  360
GFMVHSFGVI DNEWLRSLYE DRARWAPVYL IDTFFAGLAT CRLGETLSPF FERYVHKQTP  420
LKEFLDKYEL ALHRKHREET LADIESLALS TTELKTKCSF ETQLSRVYTR DVFRKFQVEV  480
EEMYSCFSTT QVHVDGPLVI FLVKERVQGE SNRREVRDFE VLYNRSVGEV RCICSCFSFY  540
GYLCRHALSV LNFSGVEEIP LRYVLPRWRK DYKRVHASDN GFVDGTDRVQ RFDQLYKGAL  600
EVVEEGAVSL DRYKVAMQVL EQALDRVHSV EEKQV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_14432.1_g00002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486989.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0D3CRC1	0.0	A0A0D3CRC1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G7R6	0.0	A0A3P6G7R6_BRAOL; Uncharacterized protein
STRING	Bo6g039630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]