PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14552.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 134aa    MW: 15180.2 Da    PI: 6.3361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14552.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.39.4e-1365133267
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikev.diykvePwdLpkkvkaeekewyfFskrdkk 67 
                              p+G++F+Ptdee++ e+L++k+  +     + ++++i +v di+ ++P++Lp  v+++ ++++fF k+ ++
  Rsa1.0_14552.1_g00001.1  65 PKGVKFNPTDEEVI-EHLQAKCGIDGsklnHFIQDFIFSVdDINFTHPQNLP-GVNKDGTSTFFFNKTVHA 133
                              89************.99***9776663343333446666769**********.677888999***987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-1351129IPR003441NAC domain
PROSITE profilePS5100514.71764134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MLLKSWKLTL GRTWIVDGPW IVENVKNVSM SSDLQIEDCG AYINCPNCGH RNDNRNVMTP  60
WPGIPKGVKF NPTDEEVIEH LQAKCGIDGS KLNHFIQDFI FSVDDINFTH PQNLPGVNKD  120
GTSTFFFNKT VHAY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_14552.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473718.12e-82PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 8-like
TrEMBLA0A3P6A2E64e-77A0A3P6A2E6_BRAOL; Uncharacterized protein
STRINGBra006257.1-P3e-73(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2356234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.12e-68NAC domain containing protein 85