PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_14949.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BBR-BPC

Protein Properties

Length: 226aa MW: 25614.5 Da PI: 8.8661

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_14949.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	115	2e-35	1	226	1	208
GAGA_bind 1 mdddgsrernkgyye..........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76 mdd g+r+ g+++ ++++ ++ +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++e Rsa1.0_14949.1_g00002.1 1 MDDGGHRD--NGWHKasqgkwmmqqQQQQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIME 84 88888854..44444556667776422334444567************************************************ PP GAGA_bind 77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161 rd++l+al++++ns++++ ++ +i+++q++++ ql+++a+e+re+e ++ + +a+++ ++ ak+pk+ Rsa1.0_14949.1_g00002.1 85 RDSALAALQFRDNSMSTSR-------QHQPHIHHHQHQHHmVQLTENAYETREMEPNDGSALDSAKPKRGKR--------AKEPKA 155 ********9966554.......5566777777766669*****999977776666555544444........444444 PP GAGA_bind 162 kkak..kkkkksekskkkvkkesad.er....................skaekksidl.vlngvslDestl 208 ++++ +++k+++k +kvkke++d + sk+++ks++ +ln+v +De+t+ Rsa1.0_14949.1_g00002.1 156 TTTTkaAANKRGPKAPRKVKKENEDdLTkimfvktnldyggeedaatgSKSDWKSQETvGLNQVVYDETTM 226 33331123333444445555555442225677778999**************9659*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	6.8E-16	1	226	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.4E-25	1	226	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDDGGHRDNG WHKASQGKWM MQQQQQQQHQ PSMKQVMSII AERDAAIQER NLAISEKKAA 60 VAERDMAFLQ RDTAIAERNN AIMERDSALA ALQFRDNSMS TSRQHQPHIH HHQHQHHMVQ 120 LTENAYETRE MEPNDGSALD SAKPKRGKRA KEPKATTTTK AAANKRGPKA PRKVKKENED 180 DLTKIMFVKT NLDYGGEEDA ATGSKSDWKS QETVGLNQVV YDETTM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_14949.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY088564	7e-65	AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBank	AY380572	7e-65	AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490883.1	1e-167	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
Swissprot	Q8L999	1e-101	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	M4DDD6	1e-106	M4DDD6_BRARP; Uncharacterized protein
STRING	Bra014504.1-P	1e-106	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6169	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	7e-92	basic pentacysteine 6