PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_15037.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 168aa    MW: 19540.4 Da    PI: 7.5725
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_15037.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.21.6e-103215210128
                      NAM  10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 
                              +d+e++  +L++k+eg+ + +   i e+  ++y+ ePw Lp++++   + +ew +  k ++++         + ++g W   g+  
  Rsa1.0_15037.1_g00001.1  32 SDSEIIEGFLRPKIEGEAVAIPGLIVELgeELYTREPWLLPQTAHPilNPREWLYLGKPNRNN-------FgVDHEGCWVRIGSAV 110
                              699***************9998889998778**********5333234667887777665543.......336679********99 PP

                      NAM  91 evlsk.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                               + s+ ++e +g    + +    kg+++  + ++W+m+eyrl
  Rsa1.0_15037.1_g00001.1 111 LIRSEeTDEIIGGTSRFRYRfrnKGDKHALRWSNWFMKEYRL 152
                              9999856667898888888777778999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.53623168IPR003441NAC domain
SuperFamilySSF1019417.98E-1832165IPR003441NAC domain
PfamPF023658.6E-632152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MLVISYDSQR IQYRLGMRTR MAGFGEEESG ISDSEIIEGF LRPKIEGEAV AIPGLIVELG  60
EELYTREPWL LPQTAHPILN PREWLYLGKP NRNNFGVDHE GCWVRIGSAV LIRSEETDEI  120
IGGTSRFRYR FRNKGDKHAL RWSNWFMKEY RLFNPTPHVI CKITEKLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_15037.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454870.11e-122PREDICTED: uncharacterized protein LOC108826005
TrEMBLA0A3P6ANR71e-105A0A3P6ANR7_BRAOL; Uncharacterized protein
STRINGBra025701.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.11e-42NAC domain containing protein 27