PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_15698.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 208aa MW: 23250.7 Da PI: 4.7216

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_15698.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.9	1.9e-24	122	207	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +Yn+YA+++GF +r+++s ++++++e + ++C++eg+++ ++ + ++ +r+etrtgC+a++++++ + ++w+v++++leHnH Rsa1.0_15698.1_g00001.1 122 YYNSYARDLGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTVKEPN---NSARRKETRTGCQAMIRLRLIELDRWKVDEVKLEHNH 204 9**************************************99888...889999***************************** PP FAR1 88 ela 90 ++ Rsa1.0_15698.1_g00001.1 205 SFD 207 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	122	207	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MTPKTASSSS PAQRQTMMDD SNAYSPHDQS LSPNSNLCIT IEEGSQSSEQ LVVVQDRDDD 60 DLPIVGDNNN PPPDLHDCDG LLTQFPAQSN ESEKCSMSSA PPPPPPPATG MEFDSYDDAY 120 TYYNSYARDL GFAIRVKSSW TKRNSKEKRG AVLCCNCEGF KTVKEPNNSA RRKETRTGCQ 180 AMIRLRLIEL DRWKVDEVKL EHNHSFDP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_15698.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445352.1	1e-146	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	5e-58	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A397YMV2	1e-104	A0A397YMV2_BRACM; Uncharacterized protein
STRING	Bo6g080100.1	1e-104	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM32202	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	3e-56	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]