PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_16243.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 203aa    MW: 23247.9 Da    PI: 8.2498
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_16243.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-0597117323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C  Cgk F+++  L  H+ +H
  Rsa1.0_16243.1_g00001.1  97 CRECGKGFPSSKALCGHMASH 117
                              99*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.58E-7536No hitNo description
Gene3DG3DSA:3.30.160.603.4E-6634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157936IPR007087Zinc finger, C2H2
SMARTSM003550.15931IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-5933IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.02195117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.47195122IPR007087Zinc finger, C2H2
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
PfamPF139122.6E-596119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-497119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEQCNERRFV CKFCNKRFAC GKSLGGHIRT HMSNKNTADS DEDDEHNKLV IDENGGQSSY  60
GLRENPKKNK RFVDQREMMA LKHQQHQHQH QQRLLCCREC GKGFPSSKAL CGHMASHSER  120
EKIVMDSQSD TEASMSPTRR RSKRVVKHHH HHKDDGFVVG GSIMNQYDSA SSDESEIETE  180
QEQMALSLMM LSRDSSGFKK GHN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_16243.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437727.11e-148PREDICTED: uncharacterized protein LOC108810094
TrEMBLA0A397YJE81e-113A0A397YJE8_BRACM; Uncharacterized protein
STRINGBo7g054120.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-85C2H2-like zinc finger protein