PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_16428.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 287aa    MW: 31876.7 Da    PI: 8.8767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_16428.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13114161355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r h ++ErrRR+++ ++f  L +++P +     kK +Ka++L  +++Y+k+Lq
  Rsa1.0_16428.1_g00001.1 114 RDHIMAERRRREKLSQRFIALSTIVPGL-----KKTDKASVLGGTIKYLKHLQ 161
                              5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.745111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10114161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16115177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-16115173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-12116161No hitNo description
SMARTSM003534.7E-13117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
VALSLMDISC NSDFNQLEYQ MMTNFPTLEE LNDILSLPSL QTMEPQLYSH QSPVVTTLNA  60
EAAQQLKHRS YMNTTTNQCS SGFGEYGVMG DLQPKKESTL LAQRKMSRGV SQARDHIMAE  120
RRRREKLSQR FIALSTIVPG LKKTDKASVL GGTIKYLKHL QGRVSFLEEQ ASQKTIESVV  180
YLNKSRLSVA DKELDCIALP EIEARSSGKN VLIRVHCERR KGVVEITMAA VEKLSLTVIN  240
SSVITFGSNS IHLTIISQMG EGFNITTKDV ATSIKSSLEA FMNANLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124ERRRRE
2120125RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_16428.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489840.10.0PREDICTED: transcription factor bHLH25-like isoform X2
TrEMBLA0A3P6BEX60.0A0A3P6BEX6_BRAOL; Uncharacterized protein
STRINGBra013128.1-P0.0(Brassica rapa)
STRINGBo3g088300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-51bHLH family protein