PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_16435.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 124aa    MW: 14350 Da    PI: 10.0305
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_16435.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-13953347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +W++ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
  Rsa1.0_16435.1_g00002.1  9 PWSENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 53
                             8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.97258IPR017930Myb domain
SuperFamilySSF466892.47E-16359IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-16557IPR006447Myb domain, plants
SMARTSM007171.5E-8656IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10852IPR009057Homeodomain-like
CDDcd001677.87E-8954No hitNo description
PfamPF002491.3E-11953IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
ETERKRGTPW SENEHKLFLI GLKRYGKGDW RSISRNVVVT RTPTQVASHA QKYFLRQNSV  60
KKERKRSSIH DITTVDTNLA MPGSNMDWTG LQESSVQTQQ QQSMSEFGQE LTPGGHYEEF  120
GYRM
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_16435.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622270.11e-84PREDICTED: transcription factor DIVARICATA-like
RefseqXP_013653806.11e-84transcription factor DIVARICATA-like
SwissprotQ8S9H72e-36DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D3AZR13e-83A0A0D3AZR1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AJ623e-83A0A3P6AJ62_BRAOL; Uncharacterized protein
STRINGBo3g002960.15e-84(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-64MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]